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Joe Zhu

shajoezhu

Commits
2069
Repos
27
Lines of code
782221
Following
0
2
Overview
27 repos
Last updated: 2019/03/13 — 08:03:00
3
Languages
27 repos
Last updated: 2019/03/13 — 08:03:00
C++
 
Commits:
1654
LOC:
613392
Shell
 
Commits:
999
LOC:
26940
R
 
Commits:
712
LOC:
15014
Python
 
Commits:
310
LOC:
16191
C
 
Commits:
292
LOC:
10240
TeX
 
Commits:
179
LOC:
3307
4
Technologies
27 repos
Last updated: 2019/03/13 — 08:03:00
Application Architecture
265 commits
Computational Science
154 commits
Efficient Data
33 commits
Python Web
2 commits
5
Fun facts
27 repos
Last updated: 2019/03/13 — 08:03:00

I'm most productive during

daytime
49% of users
d

I'm most productive on

Thursdays
15% of users
Th

I've used

Boost for 2 years

I've used

R for 5 years

I like to use

C++ templates

I've used

C for 6 years

I've used

HTML for 2 years

I prefer

snake_case

for naming variables

I prefer

spaces

for indentation

I prefer

list comprehensions

I've used

C++ for 6 years

I've used

Python for 5 years

I've used

numpy for 3 years
6
Repositories
27 repos
Last updated: 2019/03/13 — 08:03:00
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Repository
Commits
Team
Language
Timeline
2
hybrid-Lambda
350
2
C++
Hybrid-Lambda is a software package that can simulate gene trees within a rooted species network or a rooted species tree under the Kingman's coalescent or Lambda coalescent process. 
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scrm
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C++
A coalescent simulator for genome-scale sequences
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hybrid-coal
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C++
Hybrid-coal is used to compute gene tree probabilities given species network under coalescent process. We use a new representation of the species network likelihood that expresses the probability distribution of the gene tree topolgies as a linear combination of gene tree distributions given a set of species trees.
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DEploid-Lasso-lib
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utilities
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Python
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DEploid-r
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C++
An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
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DEploid-r
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2
C++
An R interface for dEploid. dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
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hybridLambda.github.io
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CSS
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graph
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C++
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